Updated depndencies for

- GradleAPI
- Launcher
- MALAPITool

Started finishing up the File handeling module in Core
- Added ReadFileTool.java which allowes to read files from this contained "file system"

modulized dependency for the API

Updated for Launcher.java to use class and method refrence to entry point to remove hard dependency

Added a @SafeVarargs to OllamaObject.java
made OllamaObject.OllamaObjectBuilder#addFileTools not throw IllegalArgumentException and instead add the tooling and return the builder

Added overloaded constructor OllamaToolErrorException#OllamaToolErrorException(String, Exception) to allow for forwarding of exceptions, although this is not recomended

PythonRunner
- Fixed bugs with it under Linux host(this MUST be refractord to support Windows and Mac hosts)
- Added a overwrite for default python print method to send prints over the external_tools socket to be put into output log for the runner
- Cleaned up some stuff
- Updated to properly refer to files
- Fixed cmd.sh generation
- Removed old "-c" addition to the command
- Removed old code related to how logs pulled from containers standerd output's
- Updated the generation of external_tools.py to respect pythons requirment of optinal arguments being after all required

Updated Tool#addTool to respect the standerd of spring boot's return model

launcher/build.gradle

@@ -7,7 +7,6 @@ version = '1.0-SNAPSHOT'
 
 dependencies {
     implementation project(":Display")
-    implementation project(":API")
     implementation project(":Core")
 }