refactor: me.zacharias.chat → me.neurodock, org rename cleanup

- Renamed package from me.zacharias.chat to me.neurodock across all 8 modules
- Updated Gradle group from me.zacharias.neurodock to me.neurodock
- Updated README and other files to reflect new Gitea org URL (Chat_things → neurodock)

Dev note: 95 files touched. The Great Refactor is complete, long may it rest.

Core/build.gradle

@@ -2,7 +2,6 @@ plugins {
     id 'java-library'
 }
 
-group = 'me.zacharias.neurodock'
 version = '1.6'
 
 dependencies {

Core/src/main/java/me/neurodock/core/Core.java

@@ -1,10 +1,10 @@
-package me.zacharias.chat.core;
+package me.neurodock.core;
 
-import me.zacharias.chat.core.memory.*;
-import me.zacharias.chat.ollama.*;
-import me.zacharias.chat.ollama.exceptions.OllamaToolErrorException;
-import me.zacharias.chat.plugin.loader.Loader;
-import me.zacharias.chat.plugin.exceptions.PluginLoadingException;
+import me.neurodock.core.memory.*;
+import me.neurodock.ollama.*;
+import me.neurodock.ollama.exceptions.OllamaToolErrorException;
+import me.neurodock.plugin.loader.Loader;
+import me.neurodock.plugin.exceptions.PluginLoadingException;
 import org.intellij.lang.annotations.MagicConstant;
 import org.jetbrains.annotations.NotNull;
 import org.json.JSONArray;
@@ -23,7 +23,7 @@ import java.util.concurrent.Executors;
 import java.util.concurrent.ScheduledExecutorService;
 import java.util.concurrent.TimeUnit;
 
-import static me.zacharias.chat.ollama.OllamaFunctionArgument.deconstructOllamaFunctionArguments;
+import static me.neurodock.ollama.OllamaFunctionArgument.deconstructOllamaFunctionArguments;
 
 /**
  * The Main class for the System, responsible for managing the OllamaObject, tools, and the Ollama API.

Core/src/main/java/me/neurodock/core/GlobalObjects.java

@@ -1,4 +1,4 @@
-package me.zacharias.chat.core;
+package me.neurodock.core;
 
 import java.util.HashMap;
 import java.util.Map;

Core/src/main/java/me/neurodock/core/LaunchOptions.java

@@ -1,4 +1,4 @@
-package me.zacharias.chat.core;
+package me.neurodock.core;
 
 /**
  * The Configuration class, where arguments are stored and retrieved. This is used to configure the running of the program from the Launcher.

Core/src/main/java/me/neurodock/core/Pair.java

@@ -1,4 +1,4 @@
-package me.zacharias.chat.core;
+package me.neurodock.core;
 
 /**
  * A simple Pair class.

Core/src/main/java/me/neurodock/core/PrintAdvanceMessageHandler.java

@@ -1,7 +1,7 @@
-package me.zacharias.chat.core;
+package me.neurodock.core;
 
-import me.zacharias.chat.ollama.OllamaMessage;
-import me.zacharias.chat.ollama.OllamaMessageRole;
+import me.neurodock.ollama.OllamaMessage;
+import me.neurodock.ollama.OllamaMessageRole;
 
 /**
  * Represents a {@link PrintAdvanceMessageHandler}.

Core/src/main/java/me/neurodock/core/PrintMessageHandler.java

@@ -1,8 +1,9 @@
-package me.zacharias.chat.core;
+package me.neurodock.core;
 
-import me.zacharias.chat.ollama.OllamaMessage;
+import me.neurodock.ollama.OllamaMessage;
+import me.neurodock.ollama.OllamaMessageRole;
 
-import static me.zacharias.chat.ollama.OllamaFunctionArgument.deconstructOllamaFunctionArguments;
+import static me.neurodock.ollama.OllamaFunctionArgument.deconstructOllamaFunctionArguments;
 
 /**
  * Represents a PrintMessageHandler.
@@ -20,7 +21,7 @@ public interface PrintMessageHandler extends PrintAdvanceMessageHandler {
      * This is a default implementation when wrapping {@link PrintAdvanceMessageHandler} to this "simpler" {@link PrintMessageHandler}
      *
      *
-     * @param message The {@link OllamaMessage} requested to be printed from a veriity of sources, see {@link me.zacharias.chat.ollama.OllamaMessageRole}
+     * @param message The {@link OllamaMessage} requested to be printed from a veriity of sources, see {@link OllamaMessageRole}
      */
     default void printMessage(OllamaMessage message) {
         printMessage(switch (message.getRole()) {

Core/src/main/java/me/neurodock/core/files/FileHandler.java

@@ -1,17 +1,14 @@
-package me.zacharias.chat.core.files;
+package me.neurodock.core.files;
 
-import me.zacharias.chat.core.Core;
-import me.zacharias.chat.core.Pair;
-import me.zacharias.chat.core.files.tools.ReadFileTool;
-import me.zacharias.chat.ollama.OllamaTool;
+import me.neurodock.core.Core;
+import me.neurodock.core.Pair;
+import me.neurodock.core.files.tools.ReadFileTool;
+import me.neurodock.ollama.OllamaTool;
 import org.intellij.lang.annotations.MagicConstant;
 
 import java.io.*;
-import java.nio.file.FileSystem;
-import java.nio.file.FileSystems;
 import java.nio.file.Path;
 import java.util.ArrayList;
-import java.util.Arrays;
 
 /**
  * Base class responsible for the {@link me.zacharias.chat.core.files} related systems
@@ -51,7 +48,7 @@ public class FileHandler {
     }
 
     /**
-     * Returns a list of all {@link me.zacharias.chat.ollama.OllamaTool}'s this module adds
+     * Returns a list of all {@link OllamaTool}'s this module adds
      * @return
      */
     public static ArrayList<Pair<? extends OllamaTool, String>> getTools() {

Core/src/main/java/me/neurodock/core/files/FileHandlerException.java

@@ -1,4 +1,4 @@
-package me.zacharias.chat.core.files;
+package me.neurodock.core.files;
 
 public class FileHandlerException extends RuntimeException {
     public FileHandlerException(String message) {

Core/src/main/java/me/neurodock/core/files/FileHandlerLocation.java

@@ -1,6 +1,6 @@
-package me.zacharias.chat.core.files;
+package me.neurodock.core.files;
 
-import me.zacharias.chat.core.Core;
+import me.neurodock.core.Core;
 
 public class FileHandlerLocation {
     public static final String DATA_FILES = Core.DATA+"/files";

Core/src/main/java/me/neurodock/core/files/ListFiles.java

@@ -0,0 +1,4 @@
+package me.neurodock.core.files;
+
+public class ListFiles {
+}

Core/src/main/java/me/neurodock/core/files/tools/ReadFileTool.java

@@ -1,11 +1,11 @@
-package me.zacharias.chat.core.files.tools;
+package me.neurodock.core.files.tools;
 
-import me.zacharias.chat.core.files.FileHandler;
-import me.zacharias.chat.ollama.OllamaFunctionArgument;
-import me.zacharias.chat.ollama.OllamaFunctionTool;
-import me.zacharias.chat.ollama.OllamaPerameter;
-import me.zacharias.chat.ollama.OllamaToolResponse;
-import me.zacharias.chat.ollama.exceptions.OllamaToolErrorException;
+import me.neurodock.core.files.FileHandler;
+import me.neurodock.ollama.OllamaFunctionArgument;
+import me.neurodock.ollama.OllamaFunctionTool;
+import me.neurodock.ollama.OllamaPerameter;
+import me.neurodock.ollama.OllamaToolResponse;
+import me.neurodock.ollama.exceptions.OllamaToolErrorException;
 import org.jetbrains.annotations.NotNull;
 
 import java.io.*;

Core/src/main/java/me/neurodock/core/memory/AddMemoryFunction.java

@@ -1,10 +1,10 @@
-package me.zacharias.chat.core.memory;
+package me.neurodock.core.memory;
 
-import me.zacharias.chat.ollama.OllamaFunctionArgument;
-import me.zacharias.chat.ollama.OllamaFunctionTool;
-import me.zacharias.chat.ollama.OllamaPerameter;
-import me.zacharias.chat.ollama.OllamaToolResponse;
-import me.zacharias.chat.ollama.exceptions.OllamaToolErrorException;
+import me.neurodock.ollama.OllamaFunctionArgument;
+import me.neurodock.ollama.OllamaFunctionTool;
+import me.neurodock.ollama.OllamaPerameter;
+import me.neurodock.ollama.OllamaToolResponse;
+import me.neurodock.ollama.exceptions.OllamaToolErrorException;
 import org.jetbrains.annotations.NotNull;
 
 /**

Core/src/main/java/me/neurodock/core/memory/CoreMemory.java

@@ -1,6 +1,6 @@
-package me.zacharias.chat.core.memory;
+package me.neurodock.core.memory;
 
-import me.zacharias.chat.core.Core;
+import me.neurodock.core.Core;
 import org.json.JSONArray;
 import org.json.JSONObject;
 

Core/src/main/java/me/neurodock/core/memory/GetMemoriesFunction.java

@@ -1,9 +1,9 @@
-package me.zacharias.chat.core.memory;
+package me.neurodock.core.memory;
 
-import me.zacharias.chat.ollama.OllamaFunctionArgument;
-import me.zacharias.chat.ollama.OllamaFunctionTool;
-import me.zacharias.chat.ollama.OllamaPerameter;
-import me.zacharias.chat.ollama.OllamaToolResponse;
+import me.neurodock.ollama.OllamaFunctionArgument;
+import me.neurodock.ollama.OllamaFunctionTool;
+import me.neurodock.ollama.OllamaPerameter;
+import me.neurodock.ollama.OllamaToolResponse;
 import org.jetbrains.annotations.NotNull;
 
 public class GetMemoriesFunction extends OllamaFunctionTool {

Core/src/main/java/me/neurodock/core/memory/GetMemoryFunction.java

@@ -1,9 +1,9 @@
-package me.zacharias.chat.core.memory;
+package me.neurodock.core.memory;
 
-import me.zacharias.chat.ollama.OllamaFunctionArgument;
-import me.zacharias.chat.ollama.OllamaFunctionTool;
-import me.zacharias.chat.ollama.OllamaPerameter;
-import me.zacharias.chat.ollama.OllamaToolResponse;
+import me.neurodock.ollama.OllamaFunctionArgument;
+import me.neurodock.ollama.OllamaFunctionTool;
+import me.neurodock.ollama.OllamaPerameter;
+import me.neurodock.ollama.OllamaToolResponse;
 import org.jetbrains.annotations.NotNull;
 
 /**

Core/src/main/java/me/neurodock/core/memory/GetMemoryIdentitiesFunction.java

@@ -1,9 +1,9 @@
-package me.zacharias.chat.core.memory;
+package me.neurodock.core.memory;
 
-import me.zacharias.chat.ollama.OllamaFunctionArgument;
-import me.zacharias.chat.ollama.OllamaFunctionTool;
-import me.zacharias.chat.ollama.OllamaPerameter;
-import me.zacharias.chat.ollama.OllamaToolResponse;
+import me.neurodock.ollama.OllamaFunctionArgument;
+import me.neurodock.ollama.OllamaFunctionTool;
+import me.neurodock.ollama.OllamaPerameter;
+import me.neurodock.ollama.OllamaToolResponse;
 import org.jetbrains.annotations.NotNull;
 import org.json.JSONArray;
 

Core/src/main/java/me/neurodock/core/memory/RemoveMemoryFunction.java

@@ -1,10 +1,10 @@
-package me.zacharias.chat.core.memory;
+package me.neurodock.core.memory;
 
-import me.zacharias.chat.ollama.OllamaFunctionArgument;
-import me.zacharias.chat.ollama.OllamaFunctionTool;
-import me.zacharias.chat.ollama.OllamaPerameter;
-import me.zacharias.chat.ollama.OllamaToolResponse;
-import me.zacharias.chat.ollama.exceptions.OllamaToolErrorException;
+import me.neurodock.ollama.OllamaFunctionArgument;
+import me.neurodock.ollama.OllamaFunctionTool;
+import me.neurodock.ollama.OllamaPerameter;
+import me.neurodock.ollama.OllamaToolResponse;
+import me.neurodock.ollama.exceptions.OllamaToolErrorException;
 import org.jetbrains.annotations.NotNull;
 
 /**

Core/src/main/java/me/neurodock/core/memory/array/AddArrayMemory.java

@@ -1,12 +1,12 @@
-package me.zacharias.chat.core.memory.array;
+package me.neurodock.core.memory.array;
 
-import me.zacharias.chat.core.memory.CoreMemory;
-import me.zacharias.chat.ollama.OllamaFunctionArgument;
-import me.zacharias.chat.ollama.OllamaFunctionTool;
-import me.zacharias.chat.ollama.OllamaPerameter;
-import me.zacharias.chat.ollama.OllamaPerameter.OllamaPerameterBuilder.Type;
-import me.zacharias.chat.ollama.OllamaToolResponse;
-import me.zacharias.chat.ollama.exceptions.OllamaToolErrorException;
+import me.neurodock.core.memory.CoreMemory;
+import me.neurodock.ollama.OllamaFunctionArgument;
+import me.neurodock.ollama.OllamaFunctionTool;
+import me.neurodock.ollama.OllamaPerameter;
+import me.neurodock.ollama.OllamaPerameter.OllamaPerameterBuilder.Type;
+import me.neurodock.ollama.OllamaToolResponse;
+import me.neurodock.ollama.exceptions.OllamaToolErrorException;
 import org.jetbrains.annotations.NotNull;
 
 public class AddArrayMemory extends OllamaFunctionTool {

Core/src/main/java/me/neurodock/core/memory/array/GetArrayMemory.java

@@ -1,11 +1,11 @@
-package me.zacharias.chat.core.memory.array;
+package me.neurodock.core.memory.array;
 
-import me.zacharias.chat.core.memory.CoreMemory;
-import me.zacharias.chat.ollama.OllamaFunctionArgument;
-import me.zacharias.chat.ollama.OllamaFunctionTool;
-import me.zacharias.chat.ollama.OllamaPerameter;
-import me.zacharias.chat.ollama.OllamaToolResponse;
-import me.zacharias.chat.ollama.OllamaPerameter.OllamaPerameterBuilder.Type;
+import me.neurodock.core.memory.CoreMemory;
+import me.neurodock.ollama.OllamaFunctionArgument;
+import me.neurodock.ollama.OllamaFunctionTool;
+import me.neurodock.ollama.OllamaPerameter;
+import me.neurodock.ollama.OllamaToolResponse;
+import me.neurodock.ollama.OllamaPerameter.OllamaPerameterBuilder.Type;
 import org.jetbrains.annotations.NotNull;
 
 public class GetArrayMemory extends OllamaFunctionTool {

Core/src/main/java/me/neurodock/core/memory/array/GetArrayedMemories.java

@@ -1,10 +1,10 @@
-package me.zacharias.chat.core.memory.array;
+package me.neurodock.core.memory.array;
 
-import me.zacharias.chat.core.memory.CoreMemory;
-import me.zacharias.chat.ollama.OllamaFunctionArgument;
-import me.zacharias.chat.ollama.OllamaFunctionTool;
-import me.zacharias.chat.ollama.OllamaPerameter;
-import me.zacharias.chat.ollama.OllamaToolResponse;
+import me.neurodock.core.memory.CoreMemory;
+import me.neurodock.ollama.OllamaFunctionArgument;
+import me.neurodock.ollama.OllamaFunctionTool;
+import me.neurodock.ollama.OllamaPerameter;
+import me.neurodock.ollama.OllamaToolResponse;
 import org.jetbrains.annotations.NotNull;
 
 public class GetArrayedMemories extends OllamaFunctionTool {

Core/src/main/java/me/neurodock/core/memory/package-info.java

@@ -2,4 +2,4 @@
  * A memory module for the AI Assistent to have the abilit to store memories between conversations, and over longer time
  * TODO: Key-Value map memory bank alongside of the array based.
  */
-package me.zacharias.chat.core.memory;
+package me.neurodock.core.memory;

Core/src/main/java/me/neurodock/ollama/OllamaFunctionArgument.java

@@ -1,4 +1,4 @@
-package me.zacharias.chat.ollama;
+package me.neurodock.ollama;
 
 import java.util.ArrayList;
 

Core/src/main/java/me/neurodock/ollama/OllamaFunctionTool.java

@@ -1,7 +1,7 @@
-package me.zacharias.chat.ollama;
+package me.neurodock.ollama;
 
-import me.zacharias.chat.core.Core;
-import me.zacharias.chat.ollama.exceptions.OllamaToolErrorException;
+import me.neurodock.core.Core;
+import me.neurodock.ollama.exceptions.OllamaToolErrorException;
 import org.jetbrains.annotations.NotNull;
 import org.json.JSONObject;
 

Core/src/main/java/me/neurodock/ollama/OllamaFunctionTools.java

@@ -1,7 +1,7 @@
-package me.zacharias.chat.ollama;
+package me.neurodock.ollama;
 
-import me.zacharias.chat.core.Core;
-import me.zacharias.chat.core.Pair;
+import me.neurodock.core.Core;
+import me.neurodock.core.Pair;
 import org.intellij.lang.annotations.MagicConstant;
 import org.jetbrains.annotations.NotNull;
 

Core/src/main/java/me/neurodock/ollama/OllamaMessage.java

@@ -1,4 +1,4 @@
-package me.zacharias.chat.ollama;
+package me.neurodock.ollama;
 
 import org.json.JSONObject;
 

Core/src/main/java/me/neurodock/ollama/OllamaMessageRole.java

@@ -1,4 +1,4 @@
-package me.zacharias.chat.ollama;
+package me.neurodock.ollama;
 
 /**
  * Represents the role of a message.

Core/src/main/java/me/neurodock/ollama/OllamaMessageToolCall.java

@@ -1,4 +1,4 @@
-package me.zacharias.chat.ollama;
+package me.neurodock.ollama;
 
 import org.json.JSONArray;
 import org.json.JSONObject;

Core/src/main/java/me/neurodock/ollama/OllamaObject.java

@@ -1,10 +1,10 @@
-package me.zacharias.chat.ollama;
+package me.neurodock.ollama;
 
-import me.zacharias.chat.core.Core;
-import me.zacharias.chat.core.LaunchOptions;
-import me.zacharias.chat.core.Pair;
-import me.zacharias.chat.core.files.FileHandlerLocation;
-import me.zacharias.chat.core.files.FileHandler;
+import me.neurodock.core.Core;
+import me.neurodock.core.LaunchOptions;
+import me.neurodock.core.Pair;
+import me.neurodock.core.files.FileHandlerLocation;
+import me.neurodock.core.files.FileHandler;
 
 import org.intellij.lang.annotations.MagicConstant;
 import org.json.JSONArray;

Core/src/main/java/me/neurodock/ollama/OllamaPerameter.java

@@ -1,4 +1,4 @@
-package me.zacharias.chat.ollama;
+package me.neurodock.ollama;
 
 import org.json.JSONObject;
 

Core/src/main/java/me/neurodock/ollama/OllamaTool.java

@@ -1,4 +1,4 @@
-package me.zacharias.chat.ollama;
+package me.neurodock.ollama;
 
 /**
  * Represents a tool.

Core/src/main/java/me/neurodock/ollama/OllamaToolError.java

@@ -1,4 +1,4 @@
-package me.zacharias.chat.ollama;
+package me.neurodock.ollama;
 
 import org.json.JSONObject;
 

Core/src/main/java/me/neurodock/ollama/OllamaToolResponse.java

@@ -1,4 +1,4 @@
-package me.zacharias.chat.ollama;
+package me.neurodock.ollama;
 
 import org.json.JSONObject;
 

Core/src/main/java/me/neurodock/ollama/exceptions/OllamaToolErrorException.java

@@ -1,6 +1,6 @@
-package me.zacharias.chat.ollama.exceptions;
+package me.neurodock.ollama.exceptions;
 
-import me.zacharias.chat.core.Core;
+import me.neurodock.core.Core;
 import org.json.JSONObject;
 
 /**

Core/src/main/java/me/neurodock/ollama/utils/SystemMessage.java

@@ -1,7 +1,7 @@
-package me.zacharias.chat.ollama.utils;
+package me.neurodock.ollama.utils;
 
-import me.zacharias.chat.ollama.OllamaMessage;
-import me.zacharias.chat.ollama.OllamaMessageRole;
+import me.neurodock.ollama.OllamaMessage;
+import me.neurodock.ollama.OllamaMessageRole;
 
 public class SystemMessage extends OllamaMessage {
     /**

Core/src/main/java/me/neurodock/plugin/loader/Loader.java

@@ -1,13 +1,14 @@
-package me.zacharias.chat.plugin.loader;
+package me.neurodock.plugin.loader;
 
 import jdk.jshell.spi.ExecutionControl;
-import me.zacharias.chat.core.Pair;
+import me.neurodock.core.Pair;
+import me.neurodock.ollama.*;
 import me.zacharias.chat.ollama.*;
-import me.zacharias.chat.plugin.Plugin;
-import me.zacharias.chat.plugin.PluginMetadata;
-import me.zacharias.chat.plugin.exceptions.ToolRuntimeException;
-import me.zacharias.chat.plugin.tool.Tool;
-import me.zacharias.chat.plugin.tool.ToolResponse;
+import me.neurodock.plugin.Plugin;
+import me.neurodock.plugin.PluginMetadata;
+import me.neurodock.plugin.exceptions.ToolRuntimeException;
+import me.neurodock.plugin.tool.Tool;
+import me.neurodock.plugin.tool.ToolResponse;
 import org.jetbrains.annotations.NotNull;
 
 import java.util.ArrayList;

Core/src/main/java/me/zacharias/chat/core/files/ListFiles.java

@@ -1,4 +0,0 @@
-package me.zacharias.chat.core.files;
-
-public class ListFiles {
-}

Core/src/test/java/FileTest.java

@@ -1,5 +1,5 @@
-import me.zacharias.chat.core.files.FileHandler;
-import me.zacharias.chat.core.files.FileHandlerException;
+import me.neurodock.core.files.FileHandler;
+import me.neurodock.core.files.FileHandlerException;
 import org.junit.jupiter.api.Assertions;
 import org.junit.jupiter.api.Test;
 

Core/src/test/java/plugin/Test.java

@@ -1,6 +1,6 @@
 package plugin;
 
-import me.zacharias.chat.plugin.Plugin;
+import me.neurodock.plugin.Plugin;
 
 public class Test extends Plugin {
 }

Core/src/test/java/plugin/Tool.java

@@ -2,10 +2,10 @@ package plugin;
 
 //// This class is broken due to the current refactoring on the RPCP part of this project.
 
-import me.zacharias.chat.ollama.OllamaFunctionArgument;
-import me.zacharias.chat.ollama.OllamaFunctionTool;
-import me.zacharias.chat.ollama.OllamaPerameter;
-import me.zacharias.chat.ollama.OllamaToolResponse;
+import me.neurodock.ollama.OllamaFunctionArgument;
+import me.neurodock.ollama.OllamaFunctionTool;
+import me.neurodock.ollama.OllamaPerameter;
+import me.neurodock.ollama.OllamaToolResponse;
 import me.zacharias.chat.plugin.annotation.OllamaTool;
 import me.zacharias.chat.plugin.annotation.injectons.InjectPlugin;
 import org.jetbrains.annotations.NotNull;