From f6610777ae612a758e383ba92f2bd35e61cb397f Mon Sep 17 00:00:00 2001
From: Zacharias <alienfromdia@proton.me>
Date: Tue, 26 May 2026 16:28:02 +0200
Subject: [PATCH] refactor: redesign plugin system and enhance message handling

- Move plugin and tool-related classes to a dedicated `Plugin-API` module.
- Introduce a new plugin lifecycle (`onInit`, `onEnable`, `onDisable`) and a more robust `Tool` API.
- Refactor `Core` to use `PrintAdvanceMessageHandler` for improved handling of assistant messages, tool responses, and errors.
- Rename `PluginLoader` to `Loader` and migrate it to `me.zacharias.chat.plugin.loader`.
- Update build configurations and Java toolchains across modules.
- Clean up obsolete plugin annotations and interfaces in the `Core` module.
---
 .gitignore                                    |  1 +
 .idea/.name                                   |  2 +-
 .idea/gradle.xml                              |  2 +-
 .idea/misc.xml                                |  2 +-
 API/build.gradle                              |  6 ++
 Core/build.gradle                             | 22 +++++-
 .../java/me/zacharias/chat/core/Core.java     | 33 ++++----
 .../chat/core/PrintAdvanceMessageHandler.java | 25 +++++++
 .../chat/core/PrintMessageHandler.java        | 36 ++++++++-
 .../zacharias/chat/ollama/OllamaMessage.java  | 14 ++++
 .../zacharias/chat/ollama/OllamaObject.java   | 16 ++--
 .../java/me/zacharias/chat/plugin/Plugin.java |  5 --
 .../zacharias/chat/plugin/PluginLoader.java   | 62 ---------------
 .../zacharias/chat/plugin/PluginMetadata.java |  9 ---
 .../annotation/injectons/InjectPlugin.java    | 14 ----
 .../zacharias/chat/plugin/loader/Loader.java  | 62 +++++++++++++++
 Core/src/test/java/plugin/Tool.java           |  5 +-
 Display/build.gradle                          |  6 ++
 GeniusAPI/build.gradle                        |  6 ++
 MALAPITool/build.gradle                       |  6 ++
 .../java/me/zacharias/chat/plugin/Data.java   |  9 +++
 .../java/me/zacharias/chat/plugin/Plugin.java | 56 ++++++++++++++
 .../zacharias/chat/plugin/PluginMetadata.java | 40 ++++++++++
 .../annotations/InjectPluginMetadata.java     |  7 +-
 .../plugin/annotations/PluginEntryPoint.java  | 13 ++++
 .../exceptions/PluginLoadingException.java    |  0
 .../exceptions/ToolRuntimeException.java      | 41 ++++++++++
 .../me/zacharias/chat/plugin/tool/Tool.java   | 75 +++++++++++++++++++
 .../chat/plugin/tool/ToolArguments.java       |  4 +
 .../chat/plugin/tool/ToolParameters.java      | 12 +++
 .../chat/plugin/tool/ToolResponse.java        | 12 +++
 WikipediaTool/build.gradle                    |  6 ++
 build.gradle                                  | 19 ++++-
 gradle.properties                             |  3 +-
 gradlew                                       |  0
 launcher/build.gradle                         |  6 ++
 settings.gradle                               |  5 +-
 37 files changed, 510 insertions(+), 132 deletions(-)
 create mode 100644 Core/src/main/java/me/zacharias/chat/core/PrintAdvanceMessageHandler.java
 delete mode 100644 Core/src/main/java/me/zacharias/chat/plugin/Plugin.java
 delete mode 100644 Core/src/main/java/me/zacharias/chat/plugin/PluginLoader.java
 delete mode 100644 Core/src/main/java/me/zacharias/chat/plugin/PluginMetadata.java
 delete mode 100644 Core/src/main/java/me/zacharias/chat/plugin/annotation/injectons/InjectPlugin.java
 create mode 100644 Core/src/main/java/me/zacharias/chat/plugin/loader/Loader.java
 create mode 100644 Plugin-API/src/main/java/me/zacharias/chat/plugin/Data.java
 create mode 100644 Plugin-API/src/main/java/me/zacharias/chat/plugin/Plugin.java
 create mode 100644 Plugin-API/src/main/java/me/zacharias/chat/plugin/PluginMetadata.java
 rename Core/src/main/java/me/zacharias/chat/plugin/annotation/OllamaTool.java => Plugin-API/src/main/java/me/zacharias/chat/plugin/annotations/InjectPluginMetadata.java (63%)
 create mode 100644 Plugin-API/src/main/java/me/zacharias/chat/plugin/annotations/PluginEntryPoint.java
 rename {Core => Plugin-API}/src/main/java/me/zacharias/chat/plugin/exceptions/PluginLoadingException.java (100%)
 create mode 100644 Plugin-API/src/main/java/me/zacharias/chat/plugin/exceptions/ToolRuntimeException.java
 create mode 100644 Plugin-API/src/main/java/me/zacharias/chat/plugin/tool/Tool.java
 create mode 100644 Plugin-API/src/main/java/me/zacharias/chat/plugin/tool/ToolArguments.java
 create mode 100644 Plugin-API/src/main/java/me/zacharias/chat/plugin/tool/ToolParameters.java
 create mode 100644 Plugin-API/src/main/java/me/zacharias/chat/plugin/tool/ToolResponse.java
 mode change 100644 => 100755 gradlew

diff --git a/.gitignore b/.gitignore
index 55589c3..d36d34c 100644
--- a/.gitignore
+++ b/.gitignore
@@ -8,6 +8,7 @@ build/
 .idea/modules.xml
 .idea/jarRepositories.xml
 .idea/compiler.xml
+.idea
 .idea/libraries/
 *.iws
 *.iml
diff --git a/.idea/.name b/.idea/.name
index 0a43fc3..f497ab9 100644
--- a/.idea/.name
+++ b/.idea/.name
@@ -1 +1 @@
-AI-test
\ No newline at end of file
+neurodock
\ No newline at end of file
diff --git a/.idea/gradle.xml b/.idea/gradle.xml
index 6a1ce52..fcfbb90 100644
--- a/.idea/gradle.xml
+++ b/.idea/gradle.xml
@@ -5,7 +5,6 @@
     <option name="linkedExternalProjectsSettings">
       <GradleProjectSettings>
         <option name="externalProjectPath" value="$PROJECT_DIR$" />
-        <option name="gradleHome" value="" />
         <option name="modules">
           <set>
             <option value="$PROJECT_DIR$" />
@@ -14,6 +13,7 @@
             <option value="$PROJECT_DIR$/Display" />
             <option value="$PROJECT_DIR$/GeniusAPI" />
             <option value="$PROJECT_DIR$/MALAPITool" />
+            <option value="$PROJECT_DIR$/Plugin-API" />
             <option value="$PROJECT_DIR$/WikipediaTool" />
             <option value="$PROJECT_DIR$/launcher" />
           </set>
diff --git a/.idea/misc.xml b/.idea/misc.xml
index f3c17f3..0ba3b46 100644
--- a/.idea/misc.xml
+++ b/.idea/misc.xml
@@ -7,7 +7,7 @@
   <component name="FrameworkDetectionExcludesConfiguration">
     <file type="web" url="file://$PROJECT_DIR$" />
   </component>
-  <component name="ProjectRootManager" version="2" languageLevel="JDK_21" project-jdk-name="26" project-jdk-type="JavaSDK">
+  <component name="ProjectRootManager" version="2" languageLevel="JDK_26" default="true" project-jdk-name="26" project-jdk-type="JavaSDK">
     <output url="file://$PROJECT_DIR$/out" />
   </component>
 </project>
\ No newline at end of file
diff --git a/API/build.gradle b/API/build.gradle
index 2dd2d34..e168004 100644
--- a/API/build.gradle
+++ b/API/build.gradle
@@ -30,3 +30,9 @@ jar{
         attributes 'Main-Class': 'me.zacharias.chat.api.APIApplication'
     }
 }
+
+java {
+    toolchain {
+        languageVersion.set(JavaLanguageVersion.of(javaVersion)) // Set Java version
+    }
+}
\ No newline at end of file
diff --git a/Core/build.gradle b/Core/build.gradle
index cf8d874..cbfb7d6 100644
--- a/Core/build.gradle
+++ b/Core/build.gradle
@@ -2,15 +2,29 @@ plugins {
     id 'java-library'
 }
 
-group = 'me.zacharias'
-version = '1.3'
+group = 'me.zacharias.neurodock'
+version = '1.5'
 
 dependencies {
-
+    implementation project(":Plugin-API")
+    api "org.json:json:20250107"
 }
 
 java {
     toolchain {
-        languageVersion.set(JavaLanguageVersion.of(21)) // Set Java version
+        languageVersion.set(JavaLanguageVersion.of(javaVersion)) // Set Java version
+    }
+}
+
+// Tell shadow not to interfere with the main publication
+shadowJar {
+    archiveClassifier = 'all'  // keeps shadow as -all.jar, not the main artifact
+}
+
+configurations {
+    [apiElements, runtimeElements].each {
+        it.outgoing.artifacts.removeIf {
+            it.buildDependencies.getDependencies(null).contains(shadowJar)
+        }
     }
 }
\ No newline at end of file
diff --git a/Core/src/main/java/me/zacharias/chat/core/Core.java b/Core/src/main/java/me/zacharias/chat/core/Core.java
index 7e09c1b..85619c2 100644
--- a/Core/src/main/java/me/zacharias/chat/core/Core.java
+++ b/Core/src/main/java/me/zacharias/chat/core/Core.java
@@ -4,7 +4,7 @@ import me.zacharias.chat.core.memory.*;
 import me.zacharias.chat.ollama.*;
 import me.zacharias.chat.ollama.exceptions.OllamaToolErrorException;
 import me.zacharias.chat.plugin.Plugin;
-import me.zacharias.chat.plugin.PluginLoader;
+import me.zacharias.chat.plugin.loader.Loader;
 import me.zacharias.chat.plugin.exceptions.PluginLoadingException;
 import org.intellij.lang.annotations.MagicConstant;
 import org.jetbrains.annotations.NotNull;
@@ -68,11 +68,7 @@ public class Core {
     /**
      * The PrintMessageHandler to use.
      */
-    private final PrintMessageHandler printMessageHandler;
-    /**
-     * If color is supported by the PrintMessageHandler.
-     */
-    private boolean supportColor;
+    private final PrintAdvanceMessageHandler printMessageHandler;
 
     public static String DATA;
     public static File DATA_DIR;
@@ -234,9 +230,8 @@ public class Core {
      * Creates a new instance of Core with the provided PrintMessageHandler
      * @param printMessageHandler The PrintMessageHandler to use as the default Output
      */
-    public Core(@NotNull PrintMessageHandler printMessageHandler) {
+    public Core(@NotNull PrintAdvanceMessageHandler printMessageHandler) {
         this.printMessageHandler = printMessageHandler;
-        supportColor = printMessageHandler.color();
         ollamaIP = "localhost";
 
         // TODO: This is a dirty way to not have a masisive init block, please check this methods comment.
@@ -248,10 +243,9 @@ public class Core {
      * @param printMessageHandler The PrintMessageHandler to use as the default Output
      * @param ollamaIP            The IP used for the Ollama backend
      */
-    public Core(@NotNull PrintMessageHandler printMessageHandler, @NotNull String ollamaIP)
+    public Core(@NotNull PrintAdvanceMessageHandler printMessageHandler, @NotNull String ollamaIP)
     {
         this.printMessageHandler = printMessageHandler;
-        supportColor = printMessageHandler.color();
         this.ollamaIP = ollamaIP;
 
         // TODO: This is a dirty way to not have a masisive init block, please check this methods comment.
@@ -466,8 +460,9 @@ public class Core {
                             }
 
                             if(functions.isEmpty()) {
-                                ollamaObject.addMessage(new OllamaToolError("Function '"+function.getString("name")+"' does not exist"));
-                                printMessageHandler.printMessage((supportColor ?"\u001b[31m":"")+"Tried funtion call "+function.getString("name")+"("+deconstructOllamaFunctionArguments(argumentArrayList)+") but failed to find it."+(printMessageHandler.color()?"\u001b[0m":""));
+                                OllamaToolError ollamaToolError = new OllamaToolError("Function '" + function.getString("name") + "' does not exist");
+                                ollamaObject.addMessage(ollamaToolError);
+                                printMessageHandler.printErrorMessage(ollamaToolError);
                                 writeLog("Failed function call to "+function.getString("name"));
                             }
                             else {
@@ -479,11 +474,12 @@ public class Core {
                                 try {
                                     OllamaToolRespnce function1 = func.function(argumentArrayList.toArray(new OllamaFunctionArgument[0]));
                                     ollamaObject.addMessage(function1);
-                                    printMessageHandler.printMessage((supportColor?"\u001b[34m":"")+"Call "+func.name() + "(" + deconstructOllamaFunctionArguments(argumentArrayList) + ")" + (supportColor?"\u001b[0m":""));
+                                    printMessageHandler.printMessage(function1);
                                     writeLog("Successfully function call " + func.name() + " output: " + function1.getResponse());
                                 } catch (OllamaToolErrorException e) {
-                                    ollamaObject.addMessage(new OllamaToolError(e.getMessage()));
-                                    printMessageHandler.printMessage((supportColor?"\u001b[31m":"")+"Tried funtion call " + func.name() + "("+deconstructOllamaFunctionArguments(argumentArrayList)+") but failed due to " + e.getError() + (supportColor?"\u001b[0m":""));
+                                    OllamaToolError ollamaToolError = new OllamaToolError(e.getMessage());
+                                    ollamaObject.addMessage(ollamaToolError);
+                                    printMessageHandler.printErrorMessage(ollamaToolError);
                                     writeLog("ERROR: "+e.getMessage());
                                 }
                             }
@@ -505,9 +501,10 @@ public class Core {
         String message = responce.getJSONObject("message").getString("content");
         if(responce.getJSONObject("message").has("content") && !message.isBlank())
         {
-            printMessageHandler.printMessage((supportColor?"\u001b[32m":"")+(LaunchOptions.getInstance().isShowFullMessage()? message : message.replaceAll("(?s)<think>.*?</think>", "")) +(supportColor?"\u001b[0m":""));
+            OllamaMessage ollamaMessage = new OllamaMessage(OllamaMessageRole.ASSISTANT, message);
+            printMessageHandler.printMessage(ollamaMessage);
             writeLog("Response content: "+ message);
-            ollamaObject.addMessage(new OllamaMessage(OllamaMessageRole.ASSISTANT, message));
+            ollamaObject.addMessage(ollamaMessage);
         }
     }
     
@@ -541,7 +538,7 @@ public class Core {
         if(files == null) {
             return;
         }
-        PluginLoader loader = new PluginLoader();
+        Loader loader = new Loader();
         for(File file : files) {
             try(FileSystem fs = FileSystems.newFileSystem(file.toPath())){
                 if(!fs.getPath("/plugin.json").toFile().exists())
diff --git a/Core/src/main/java/me/zacharias/chat/core/PrintAdvanceMessageHandler.java b/Core/src/main/java/me/zacharias/chat/core/PrintAdvanceMessageHandler.java
new file mode 100644
index 0000000..0b77b8f
--- /dev/null
+++ b/Core/src/main/java/me/zacharias/chat/core/PrintAdvanceMessageHandler.java
@@ -0,0 +1,25 @@
+package me.zacharias.chat.core;
+
+import me.zacharias.chat.ollama.OllamaMessage;
+import me.zacharias.chat.ollama.OllamaMessageRole;
+
+/**
+ * Represents a {@link PrintAdvanceMessageHandler}.
+ * This is used by the {@link Core} to print messages for the user, LLM, Tools, or potentialy System, see {@link OllamaMessageRole}.
+ * For a simpler version see {@link PrintMessageHandler}
+ */
+public interface PrintAdvanceMessageHandler {
+    /**
+     * Expected to handle the printing of the provided {@link OllamaMessage}.
+     * @param message The {@link OllamaMessage} requested to be printed from a veriity of sources, see {@link OllamaMessageRole}
+     */
+    void printMessage(OllamaMessage message);
+
+    /**
+     * Default method to print error messages to the user or API Client.
+     * This uses ANSI escape codes to color the output red if color is supported.
+     * @param errorMessage The error message to be printed.
+     * If color is not supported, it will print the message without color.
+     */
+    void printErrorMessage(OllamaMessage errorMessage);
+}
diff --git a/Core/src/main/java/me/zacharias/chat/core/PrintMessageHandler.java b/Core/src/main/java/me/zacharias/chat/core/PrintMessageHandler.java
index fd189fd..38c26a2 100644
--- a/Core/src/main/java/me/zacharias/chat/core/PrintMessageHandler.java
+++ b/Core/src/main/java/me/zacharias/chat/core/PrintMessageHandler.java
@@ -1,16 +1,35 @@
 package me.zacharias.chat.core;
 
+import me.zacharias.chat.ollama.OllamaMessage;
+
+import static me.zacharias.chat.ollama.OllamaFunctionArgument.deconstructOllamaFunctionArguments;
+
 /**
  * Represents a PrintMessageHandler.
- * This is used by the Core to print messages to the user or API Clients.
+ * The Core uses this to print messages to the user or API Clients.
  */
-public interface PrintMessageHandler {
+public interface PrintMessageHandler extends PrintAdvanceMessageHandler {
     /**
      * Handles the printing of a message.
      * This is meant to output the message to the user or API Client.
      * @param message The message to be printed.
      */
     void printMessage(String message);
+
+    /**
+     * This is a default implementation when wrapping {@link PrintAdvanceMessageHandler} to this "simpler" {@link PrintMessageHandler}
+     *
+     *
+     * @param message The {@link OllamaMessage} requested to be printed from a veriity of sources, see {@link me.zacharias.chat.ollama.OllamaMessageRole}
+     */
+    default void printMessage(OllamaMessage message) {
+        printMessage(switch (message.getRole()) {
+            case ASSISTANT -> (color()?"\u001b[32m":"")+(LaunchOptions.getInstance().isShowFullMessage()? message.getContent() : message.getContent().replaceAll("(?s)<think>.*?</think>", "")) +(color()?"\u001b[0m":"");
+            case TOOL -> (color() ?"\u001b[31m":"")+message.getContent()+(color()?"\u001b[0m":"");
+            case USER, SYSTEM -> (color() ?"\u001b[37m":"")+message.getContent()+(color()?"\u001b[0m":"");
+            default -> throw new IllegalArgumentException("Invalid message role");
+        });
+    }
     
     /**
      * Gets if color is supported by the PrintMessageHandler.
@@ -32,4 +51,17 @@ public interface PrintMessageHandler {
             printMessage(message);
         }
     }
+
+    /**
+     * This is a default implementation when wrapping {@link PrintAdvanceMessageHandler} to this "simpler" {@link PrintMessageHandler}
+     *
+     *
+     * Default method to print error messages to the user or API Client.
+     * This uses ANSI escape codes to color the output red if color is supported.
+     * @param errorMessage The error message to be printed.
+     * If color is not supported, it will print the message without color.
+     */
+    default void printErrorMessage(OllamaMessage errorMessage) {
+        printError(errorMessage.getContent());
+    }
 }
diff --git a/Core/src/main/java/me/zacharias/chat/ollama/OllamaMessage.java b/Core/src/main/java/me/zacharias/chat/ollama/OllamaMessage.java
index 9bed926..c60b7c2 100644
--- a/Core/src/main/java/me/zacharias/chat/ollama/OllamaMessage.java
+++ b/Core/src/main/java/me/zacharias/chat/ollama/OllamaMessage.java
@@ -25,6 +25,20 @@ public class OllamaMessage {
         this.content = content;
     }
 
+    /**
+     * @return The role of who sent this "message", represented as {@link OllamaMessageRole}
+     */
+    public OllamaMessageRole getRole() {
+        return role;
+    }
+
+    /**
+     * @return The "message" or content sent by a source
+     */
+    public String getContent() {
+        return content;
+    }
+
     @Override
     public String toString() {
         JSONObject json = new JSONObject();
diff --git a/Core/src/main/java/me/zacharias/chat/ollama/OllamaObject.java b/Core/src/main/java/me/zacharias/chat/ollama/OllamaObject.java
index a375741..2611204 100644
--- a/Core/src/main/java/me/zacharias/chat/ollama/OllamaObject.java
+++ b/Core/src/main/java/me/zacharias/chat/ollama/OllamaObject.java
@@ -1,6 +1,5 @@
 package me.zacharias.chat.ollama;
 
-import com.sun.source.util.Plugin;
 import me.zacharias.chat.core.Core;
 import me.zacharias.chat.core.LaunchOptions;
 import me.zacharias.chat.core.Pair;
@@ -15,10 +14,6 @@ import java.io.BufferedReader;
 import java.io.File;
 import java.io.FileReader;
 import java.lang.reflect.Field;
-import java.nio.file.FileSystem;
-import java.nio.file.FileSystems;
-import java.nio.file.Files;
-import java.nio.file.Path;
 import java.util.ArrayList;
 import java.util.HashMap;
 import java.util.List;
@@ -452,6 +447,17 @@ public class OllamaObject {
             return this;
         }
 
+        /**
+         * Initializes the {@link FileHandler} singleton with the given base directory and adds its tools.
+         * <p>
+         * The {@link FileHandler} is intentionally constructed here rather than eagerly,
+         * as file access tooling should only be initialized if explicitly requested during
+         * object construction. Calling this after {@link #build()} is technically possible
+         * but not intended.
+         * </p>
+         * @param baseDirectory the base directory for file access, see {@link FileHandlerLocation}
+         * @return The {@link OllamaObjectBuilder}
+         */
         public OllamaObjectBuilder addFileTools(@MagicConstant(valuesFromClass = FileHandlerLocation.class) String baseDirectory)
         {
             new FileHandler(baseDirectory);
diff --git a/Core/src/main/java/me/zacharias/chat/plugin/Plugin.java b/Core/src/main/java/me/zacharias/chat/plugin/Plugin.java
deleted file mode 100644
index e06a9d9..0000000
--- a/Core/src/main/java/me/zacharias/chat/plugin/Plugin.java
+++ /dev/null
@@ -1,5 +0,0 @@
-package me.zacharias.chat.plugin;
-
-public class Plugin {
-    private final PluginMetadata metadata = null;
-}
diff --git a/Core/src/main/java/me/zacharias/chat/plugin/PluginLoader.java b/Core/src/main/java/me/zacharias/chat/plugin/PluginLoader.java
deleted file mode 100644
index 20bed0e..0000000
--- a/Core/src/main/java/me/zacharias/chat/plugin/PluginLoader.java
+++ /dev/null
@@ -1,62 +0,0 @@
-package me.zacharias.chat.plugin;
-
-import org.json.JSONObject;
-
-import java.lang.reflect.Field;
-import java.nio.file.FileSystem;
-import java.nio.file.Path;
-
-public class PluginLoader {
-
-    public PluginLoader() {
-    }
-
-    public Plugin loadPlugin(FileSystem pluginJar, JSONObject pluginMeta) throws ClassNotFoundException, IllegalAccessException, InstantiationException {
-        String pluginName = pluginMeta.getString("name");
-        String pluginEntryPoint = pluginMeta.getString("entryPoint");
-        String pluginVersion = pluginMeta.getString("version");
-        String pluginDescription = pluginMeta.optString("description", "No description provided");
-        String[] pluginAuthors = pluginMeta.optJSONArray("author") != null ?
-            pluginMeta.getJSONArray("author").toList().toArray(new String[0]) : new String[0];
-
-        PluginMetadata pluginMetadata = new PluginMetadata() {
-            @Override
-            public String getName() {
-                return pluginName;
-            }
-
-            @Override
-            public String getVersion() {
-                return pluginVersion;
-            }
-
-            @Override
-            public String getDescription() {
-                return pluginDescription;
-            }
-
-            @Override
-            public String[] getAuthor() {
-                return pluginAuthors;
-            }
-
-            @Override
-            public String entryPoint() {
-                return pluginEntryPoint;
-            }
-        };
-
-        try {
-            Plugin plugin = (Plugin) Class.forName(pluginEntryPoint).newInstance();
-            Field metadataField = plugin.getClass().getDeclaredField("metadata");
-            metadataField.set(plugin, pluginMetadata);
-            if (metadataField.get(plugin) == null)
-                throw new IllegalStateException("Plugin metadata field is null for plugin: " + pluginName);
-        }catch (NoSuchFieldException e)
-        {
-            throw new IllegalStateException("Plugin class " + pluginEntryPoint + " does not have a 'metadata' field", e);
-        }
-        return null;
-        //ClassLoader classLoader = pluginJar.
-    }
-}
diff --git a/Core/src/main/java/me/zacharias/chat/plugin/PluginMetadata.java b/Core/src/main/java/me/zacharias/chat/plugin/PluginMetadata.java
deleted file mode 100644
index f2a0460..0000000
--- a/Core/src/main/java/me/zacharias/chat/plugin/PluginMetadata.java
+++ /dev/null
@@ -1,9 +0,0 @@
-package me.zacharias.chat.plugin;
-
-public interface PluginMetadata {
-    public String getName();
-    public String getVersion();
-    public String getDescription();
-    public String[] getAuthor();
-    public String entryPoint();
-}
diff --git a/Core/src/main/java/me/zacharias/chat/plugin/annotation/injectons/InjectPlugin.java b/Core/src/main/java/me/zacharias/chat/plugin/annotation/injectons/InjectPlugin.java
deleted file mode 100644
index d18b9b3..0000000
--- a/Core/src/main/java/me/zacharias/chat/plugin/annotation/injectons/InjectPlugin.java
+++ /dev/null
@@ -1,14 +0,0 @@
-package me.zacharias.chat.plugin.annotation.injectons;
-
-import me.zacharias.chat.plugin.Plugin;
-
-import java.lang.annotation.ElementType;
-import java.lang.annotation.Retention;
-import java.lang.annotation.RetentionPolicy;
-import java.lang.annotation.Target;
-
-@Retention(RetentionPolicy.RUNTIME)
-@Target({ElementType.FIELD, ElementType.PARAMETER, ElementType.METHOD})
-public @interface InjectPlugin {
-    Class<? extends Plugin> classType() default Plugin.class;
-}
diff --git a/Core/src/main/java/me/zacharias/chat/plugin/loader/Loader.java b/Core/src/main/java/me/zacharias/chat/plugin/loader/Loader.java
new file mode 100644
index 0000000..db94895
--- /dev/null
+++ b/Core/src/main/java/me/zacharias/chat/plugin/loader/Loader.java
@@ -0,0 +1,62 @@
+package me.zacharias.chat.plugin.loader;
+
+import jdk.jshell.spi.ExecutionControl;
+import me.zacharias.chat.core.Pair;
+import me.zacharias.chat.ollama.*;
+import me.zacharias.chat.plugin.Plugin;
+import me.zacharias.chat.plugin.PluginMetadata;
+import me.zacharias.chat.plugin.exceptions.ToolRuntimeException;
+import me.zacharias.chat.plugin.tool.Tool;
+import me.zacharias.chat.plugin.tool.ToolResponse;
+import org.jetbrains.annotations.NotNull;
+
+import java.util.ArrayList;
+
+public class Loader {
+    private final ArrayList<Pair<Plugin, PluginMetadata>> plugins = new ArrayList<>();
+
+    /**
+     * Mock example!
+     * @return
+     */
+    public OllamaTool getTool() {
+        // Mock example!
+        Tool tool = null;
+
+        return new OllamaFunctionTool() {
+            @Override
+            public @NotNull String name() {
+                return tool.name();
+            }
+
+            @Override
+            public String description() {
+                return tool.description();
+            }
+
+            @Override
+            public @NotNull OllamaPerameter parameters() {
+                // TODO: make a wrapper around ToolPerameters to OllamaPeramer
+                throw new RuntimeException(new ExecutionControl.NotImplementedException("To be Implemented"));
+            }
+
+            @Override
+            public OllamaToolRespnce function(OllamaFunctionArgument... args) {
+                // Wrap OllamaFunctionArguments[] to ether ToolArgument[] or ToolArguments(current implementation)
+                try {
+                    ToolResponse toolResponse = tool.callTool(null);
+                } catch (ToolRuntimeException e) {
+                    throw new RuntimeException(e);
+                }
+                // Wrap ToolResponce to an OllamaToolRespnce(Well I see a typo here now)
+                return null;
+            }
+
+            @Override
+            public String toString() {
+                // Replaces the toString which is used thru out the Core and OllamaObject to get the JSON representation of a Function Tool
+                return tool.getToolJSON();
+            }
+        };
+    }
+}
diff --git a/Core/src/test/java/plugin/Tool.java b/Core/src/test/java/plugin/Tool.java
index 2129e0a..310d981 100644
--- a/Core/src/test/java/plugin/Tool.java
+++ b/Core/src/test/java/plugin/Tool.java
@@ -6,6 +6,7 @@ import me.zacharias.chat.ollama.OllamaPerameter;
 import me.zacharias.chat.ollama.OllamaToolRespnce;
 import me.zacharias.chat.plugin.annotation.OllamaTool;
 import me.zacharias.chat.plugin.annotation.injectons.InjectPlugin;
+import org.jetbrains.annotations.NotNull;
 
 @OllamaTool
 public class Tool extends OllamaFunctionTool {
@@ -13,7 +14,7 @@ public class Tool extends OllamaFunctionTool {
     Test core;
 
     @Override
-    public String name() {
+    public @NotNull String name() {
         return "";
     }
 
@@ -23,7 +24,7 @@ public class Tool extends OllamaFunctionTool {
     }
 
     @Override
-    public OllamaPerameter parameters() {
+    public @NotNull OllamaPerameter parameters() {
         return null;
     }
 
diff --git a/Display/build.gradle b/Display/build.gradle
index 8968927..2807642 100644
--- a/Display/build.gradle
+++ b/Display/build.gradle
@@ -24,4 +24,10 @@ jar{
     manifest {
         attributes 'Main-Class': 'me.zacharias.chat.display.Main'
     }
+}
+
+java {
+    toolchain {
+        languageVersion.set(JavaLanguageVersion.of(javaVersion)) // Set Java version
+    }
 }
\ No newline at end of file
diff --git a/GeniusAPI/build.gradle b/GeniusAPI/build.gradle
index e4d6d31..88795a9 100644
--- a/GeniusAPI/build.gradle
+++ b/GeniusAPI/build.gradle
@@ -21,4 +21,10 @@ dependencies {
 
 test {
     useJUnitPlatform()
+}
+
+java {
+    toolchain {
+        languageVersion.set(JavaLanguageVersion.of(javaVersion)) // Set Java version
+    }
 }
\ No newline at end of file
diff --git a/MALAPITool/build.gradle b/MALAPITool/build.gradle
index cb0882f..1f50762 100644
--- a/MALAPITool/build.gradle
+++ b/MALAPITool/build.gradle
@@ -20,4 +20,10 @@ dependencies {
 
 test {
     useJUnitPlatform()
+}
+
+java {
+    toolchain {
+        languageVersion.set(JavaLanguageVersion.of(javaVersion)) // Set Java version
+    }
 }
\ No newline at end of file
diff --git a/Plugin-API/src/main/java/me/zacharias/chat/plugin/Data.java b/Plugin-API/src/main/java/me/zacharias/chat/plugin/Data.java
new file mode 100644
index 0000000..73285d7
--- /dev/null
+++ b/Plugin-API/src/main/java/me/zacharias/chat/plugin/Data.java
@@ -0,0 +1,9 @@
+package me.zacharias.chat.plugin;
+
+import java.io.File;
+
+public abstract class Data {
+    public abstract File getDataDictionary();
+    public abstract LoadedPlugins getLoadedPlugins();
+    public abstract File getCacheDirectory();
+}
diff --git a/Plugin-API/src/main/java/me/zacharias/chat/plugin/Plugin.java b/Plugin-API/src/main/java/me/zacharias/chat/plugin/Plugin.java
new file mode 100644
index 0000000..fa4f229
--- /dev/null
+++ b/Plugin-API/src/main/java/me/zacharias/chat/plugin/Plugin.java
@@ -0,0 +1,56 @@
+package me.zacharias.chat.plugin;
+
+
+import me.zacharias.chat.plugin.annotations.InjectPluginMetadata;
+import me.zacharias.chat.plugin.annotations.PluginEntryPoint;
+import me.zacharias.chat.plugin.tool.Tool;
+import org.jetbrains.annotations.NotNull;
+
+/**
+ * Entry point for the plugin, this is required for the plugin to work, and you MUST annotate it with {@link PluginEntryPoint}
+ */
+public abstract class Plugin {
+
+    /**
+     * This shuld be used if {@link PluginEntryPoint#requireData()} is false (default)
+     * @apiNote While in this constructor, it is not safe to assume any plugin is loaded other than potentially defined plugins in {@link PluginEntryPoint#dependencies()}. See {@link this#onInit}
+     */
+    public Plugin() {}
+
+    /**
+     * This shuld be used if {@link PluginEntryPoint#requireData()} is true
+     * @apiNote While in this constructor, it is not safe to assume any plugin is loaded other than potentially defined plugins in {@link PluginEntryPoint#dependencies()}. See {@link this#onInit}
+     * @param data the {@link Data} generated by the plugin loader
+     */
+    public Plugin(Data data) {}
+
+    /**
+     * This will be called once every plugin has been loaded
+     */
+    public void onInit(){}
+
+    /**
+     * This will be called if the core gets a "fetal" exception or fails to fetch certain info
+     */
+    public void onDisable(){}
+
+    /**
+     * This will be called after all plugins have been initialised; here it is safe to perform potential stuff where you load data from optional dependencies, or similar things
+     */
+    public void onEnable(){}
+
+    /**
+     * The "main" method of a plugin, it will be the one returning a list of all tools you define.
+     * @return An array of all {@link Tool}s you provide in this plugin, see {@link Tool} for definitions or <a href="https://git.server.4zellen.se/Chat_things/NeuroDock/src/branch/master/MALAPITool">MAL API tool</a> for ideas or examples
+     */
+    public Tool[] getTools(){
+        return null;
+    }
+
+    /**
+     * This represents your plugin's Metadata
+     * @return A {@link PluginMetadata} object representing the metadata for your plugin
+     */
+    @NotNull
+    public abstract PluginMetadata getMetadata();
+}
diff --git a/Plugin-API/src/main/java/me/zacharias/chat/plugin/PluginMetadata.java b/Plugin-API/src/main/java/me/zacharias/chat/plugin/PluginMetadata.java
new file mode 100644
index 0000000..eeb93a8
--- /dev/null
+++ b/Plugin-API/src/main/java/me/zacharias/chat/plugin/PluginMetadata.java
@@ -0,0 +1,40 @@
+package me.zacharias.chat.plugin;
+
+import org.jetbrains.annotations.NotNull;
+
+/**
+ * Interface defining the core properties/information about the plugin
+ */
+public interface PluginMetadata {
+    /**
+     * Returns the name of the plugin
+     * @return String containing the name
+     */
+    @NotNull
+    public String getName();
+
+    /**
+     * Version of the project
+     * @return String returning the version, expected format Major.Minor.Path see <a href="https://semver.org/">semver.org</a>
+     */
+    @NotNull
+    public String getVersion();
+
+    /**
+     * Description for the tool, shuld be an explanatory, yet simple description
+     * @return String containing the description
+     */
+    default String getDescription() {
+        return null;
+    }
+
+    /**
+     * A String containing a list of all authors for this<br>
+     * May be empty, but may not be null
+     * @return
+     */
+    @NotNull
+    default String[] getAuthor() {
+        return new String[0];
+    }
+}
diff --git a/Core/src/main/java/me/zacharias/chat/plugin/annotation/OllamaTool.java b/Plugin-API/src/main/java/me/zacharias/chat/plugin/annotations/InjectPluginMetadata.java
similarity index 63%
rename from Core/src/main/java/me/zacharias/chat/plugin/annotation/OllamaTool.java
rename to Plugin-API/src/main/java/me/zacharias/chat/plugin/annotations/InjectPluginMetadata.java
index b0fe1d6..04fcdf3 100644
--- a/Core/src/main/java/me/zacharias/chat/plugin/annotation/OllamaTool.java
+++ b/Plugin-API/src/main/java/me/zacharias/chat/plugin/annotations/InjectPluginMetadata.java
@@ -1,4 +1,4 @@
-package me.zacharias.chat.plugin.annotation;
+package me.zacharias.chat.plugin.annotations;
 
 import java.lang.annotation.ElementType;
 import java.lang.annotation.Retention;
@@ -6,7 +6,6 @@ import java.lang.annotation.RetentionPolicy;
 import java.lang.annotation.Target;
 
 @Retention(RetentionPolicy.RUNTIME)
-@Target(ElementType.TYPE)
-public @interface OllamaTool {
-
+@Target(ElementType.FIELD)
+public @interface InjectPluginMetadata {
 }
diff --git a/Plugin-API/src/main/java/me/zacharias/chat/plugin/annotations/PluginEntryPoint.java b/Plugin-API/src/main/java/me/zacharias/chat/plugin/annotations/PluginEntryPoint.java
new file mode 100644
index 0000000..496c08b
--- /dev/null
+++ b/Plugin-API/src/main/java/me/zacharias/chat/plugin/annotations/PluginEntryPoint.java
@@ -0,0 +1,13 @@
+package me.zacharias.chat.plugin.annotations;
+
+import java.lang.annotation.ElementType;
+import java.lang.annotation.Retention;
+import java.lang.annotation.RetentionPolicy;
+import java.lang.annotation.Target;
+
+@Retention(RetentionPolicy.RUNTIME)
+@Target(ElementType.TYPE)
+public @interface PluginEntryPoint {
+    boolean requireData() default true;
+    String[] dependencies() default {};
+}
diff --git a/Core/src/main/java/me/zacharias/chat/plugin/exceptions/PluginLoadingException.java b/Plugin-API/src/main/java/me/zacharias/chat/plugin/exceptions/PluginLoadingException.java
similarity index 100%
rename from Core/src/main/java/me/zacharias/chat/plugin/exceptions/PluginLoadingException.java
rename to Plugin-API/src/main/java/me/zacharias/chat/plugin/exceptions/PluginLoadingException.java
diff --git a/Plugin-API/src/main/java/me/zacharias/chat/plugin/exceptions/ToolRuntimeException.java b/Plugin-API/src/main/java/me/zacharias/chat/plugin/exceptions/ToolRuntimeException.java
new file mode 100644
index 0000000..47c8159
--- /dev/null
+++ b/Plugin-API/src/main/java/me/zacharias/chat/plugin/exceptions/ToolRuntimeException.java
@@ -0,0 +1,41 @@
+package me.zacharias.chat.plugin.exceptions;
+
+import me.zacharias.chat.plugin.tool.Tool;
+
+public class ToolRuntimeException extends Exception {
+    String toolName;
+
+    public String getToolName() {
+        return toolName;
+    }
+
+    public ToolRuntimeException(Tool tool, String message) {
+        super(message);
+        this.toolName = tool.name();
+    }
+
+    public ToolRuntimeException(String toolName, String message) {
+        super(message);
+        this.toolName = toolName;
+    }
+
+    public ToolRuntimeException(String toolName, String message, Throwable cause) {
+        super(message, cause);
+        this.toolName = toolName;
+    }
+
+    public ToolRuntimeException(Tool tool, String message, Throwable cause) {
+        super(message, cause);
+        this.toolName = tool.name();
+    }
+
+    public ToolRuntimeException(Tool tool, Throwable cause) {
+        super(cause);
+        this.toolName = tool.name();
+    }
+
+    public ToolRuntimeException(String toolName, Throwable cause) {
+        super(cause);
+        this.toolName = toolName;
+    }
+}
diff --git a/Plugin-API/src/main/java/me/zacharias/chat/plugin/tool/Tool.java b/Plugin-API/src/main/java/me/zacharias/chat/plugin/tool/Tool.java
new file mode 100644
index 0000000..070f5a0
--- /dev/null
+++ b/Plugin-API/src/main/java/me/zacharias/chat/plugin/tool/Tool.java
@@ -0,0 +1,75 @@
+package me.zacharias.chat.plugin.tool;
+
+import me.zacharias.chat.plugin.Plugin;
+import me.zacharias.chat.plugin.exceptions.ToolRuntimeException;
+import org.jetbrains.annotations.NotNull;
+import org.json.JSONObject;
+
+public abstract class Tool {
+
+    /**
+     * The parent plugin of this tool, used by {@link Tool#getToolJSON()}.
+     */
+    protected final Plugin PLUGIN;
+
+    /**
+     * A base contructor, as the {@link Plugin} is used within this class
+     * @param plugin The plugin that owns this tool
+     */
+    public Tool(Plugin plugin) {
+        this.PLUGIN = plugin;
+    }
+
+    /**
+     * The core uses this method when generating the list of available functions to the LLM
+     * @return a string formated JSON containing the representation of the tool definitions
+     */
+    public final String getToolJSON() {
+        JSONObject ret = new JSONObject();
+        ret.put("type", "function");
+
+        JSONObject function = new JSONObject();
+        function.put("name", String.format("%s_%s_RPCP", name(), PLUGIN.getMetadata().getName()).replaceAll(" ", "_"));
+        if(description() != null) {
+            function.put("description", description());
+        }
+        function.put("parameters", (parameters() == null? new JSONObject() : new JSONObject(parameters().toString())));
+
+        ret.put("function", function);
+
+        return ret.toString();
+    }
+
+    /**
+     * <p>Name of the tool.</p>
+     * @apiNote This is a lower snake_case formated string.
+     * <p>Example: {@code "get_clock"}</p>
+     * @return returns the name of this tool
+     */
+    @NotNull
+    abstract public String name();
+
+    /**
+     * Description for the LLM on what this tool does
+     * @return Short description defining the scope of this tool
+     */
+    public String description() {
+        return null;
+    }
+
+    /**
+     * The parameters this tool allows
+     * @apiNote Can return {@link ToolParameters#empty()} if no arguments are needed
+     * @return A {@link ToolParameters} object defining what this tool expects when being called
+     */
+    @NotNull
+    abstract public ToolParameters parameters();
+
+    /**
+     * This is the main course of the tool. The LLM will call this on request of using your tool
+     * @param arguments A collective of your {@link ToolParameters} from {@link Tool#parameters()}
+     * @return The expected results, or {@link ToolResponse#empty(Tool)} if this is a "void" function
+     * @throws ToolRuntimeException This indicates that an {@link Exception} is not fatal, any other exceptions thrown from this tool will be treated as fatal, and will result in this tool, or it's plugin being disabled
+     */
+    abstract public ToolResponse callTool(ToolArguments arguments) throws ToolRuntimeException;
+}
diff --git a/Plugin-API/src/main/java/me/zacharias/chat/plugin/tool/ToolArguments.java b/Plugin-API/src/main/java/me/zacharias/chat/plugin/tool/ToolArguments.java
new file mode 100644
index 0000000..277908e
--- /dev/null
+++ b/Plugin-API/src/main/java/me/zacharias/chat/plugin/tool/ToolArguments.java
@@ -0,0 +1,4 @@
+package me.zacharias.chat.plugin.tool;
+
+public class ToolArguments {
+}
diff --git a/Plugin-API/src/main/java/me/zacharias/chat/plugin/tool/ToolParameters.java b/Plugin-API/src/main/java/me/zacharias/chat/plugin/tool/ToolParameters.java
new file mode 100644
index 0000000..ecb50fa
--- /dev/null
+++ b/Plugin-API/src/main/java/me/zacharias/chat/plugin/tool/ToolParameters.java
@@ -0,0 +1,12 @@
+package me.zacharias.chat.plugin.tool;
+
+public class ToolParameters {
+    /**
+     * An empty {@link ToolParameters} for when a tool dosent need any perameters
+     * @return the default {@link ToolParameters}
+     */
+    public static ToolParameters empty() {
+        return new ToolParameters();
+    }
+
+}
diff --git a/Plugin-API/src/main/java/me/zacharias/chat/plugin/tool/ToolResponse.java b/Plugin-API/src/main/java/me/zacharias/chat/plugin/tool/ToolResponse.java
new file mode 100644
index 0000000..201844a
--- /dev/null
+++ b/Plugin-API/src/main/java/me/zacharias/chat/plugin/tool/ToolResponse.java
@@ -0,0 +1,12 @@
+package me.zacharias.chat.plugin.tool;
+
+public class ToolResponse {
+    public static ToolResponse empty(Tool tool) {
+        return new ToolResponse();
+    }
+
+    public static ToolResponse empty(String toolName)
+    {
+        return new ToolResponse();
+    }
+}
diff --git a/WikipediaTool/build.gradle b/WikipediaTool/build.gradle
index 96f35b1..ce71caf 100644
--- a/WikipediaTool/build.gradle
+++ b/WikipediaTool/build.gradle
@@ -20,4 +20,10 @@ dependencies {
 
 test {
     useJUnitPlatform()
+}
+
+java {
+    toolchain {
+        languageVersion.set(JavaLanguageVersion.of(javaVersion)) // Set Java version
+    }
 }
\ No newline at end of file
diff --git a/build.gradle b/build.gradle
index 24a8b0b..4a44540 100644
--- a/build.gradle
+++ b/build.gradle
@@ -21,7 +21,6 @@ subprojects {
     apply plugin: 'com.gradleup.shadow'
 
     dependencies {
-        implementation("org.json:json:20250107")
         implementation("org.jetbrains:annotations:23.1.0")
 
         testImplementation 'org.junit.jupiter:junit-jupiter:5.10.0'
@@ -73,4 +72,22 @@ subprojects {
             }
         }
     }
+
+    publishing {
+        publications {
+            maven(MavenPublication) {
+                from components.java
+            }
+        }
+        repositories {
+            maven {
+                name = "gitea"
+                url = "https://git.server.4zellen.se/api/packages/Chat_things/maven"
+                credentials {
+                    username = project.findProperty("giteaUser")
+                    password = project.findProperty("giteaToken")
+                }
+            }
+        }
+    }
 }
\ No newline at end of file
diff --git a/gradle.properties b/gradle.properties
index 02f59c4..a660a34 100644
--- a/gradle.properties
+++ b/gradle.properties
@@ -1,2 +1,3 @@
 # This is used in sub-project that dosent explicitly require the API sub-project to only include if thay shuld be included project wide.
-useAPI = true
\ No newline at end of file
+useAPI = true
+javaVersion = 26
\ No newline at end of file
diff --git a/gradlew b/gradlew
old mode 100644
new mode 100755
diff --git a/launcher/build.gradle b/launcher/build.gradle
index b799b87..cab1a7a 100644
--- a/launcher/build.gradle
+++ b/launcher/build.gradle
@@ -15,3 +15,9 @@ jar{
         attributes 'Main-Class': 'me.zacharias.chat.launcher.Launcher'
     }
 }
+
+java {
+    toolchain {
+        languageVersion.set(JavaLanguageVersion.of(javaVersion)) // Set Java version
+    }
+}
\ No newline at end of file
diff --git a/settings.gradle b/settings.gradle
index 78a8342..b938bf5 100644
--- a/settings.gradle
+++ b/settings.gradle
@@ -1,4 +1,4 @@
-rootProject.name = 'AI-test'
+rootProject.name = 'neurodock'
 include 'API', 'Core', 'Display', 'launcher'
 
 
@@ -12,4 +12,5 @@ include 'MALAPITool'
  */
 include 'GeniusAPI'
 
-include 'WikipediaTool'
\ No newline at end of file
+include 'WikipediaTool'
+include 'Plugin-API'
\ No newline at end of file